Bioimage Analyst (m/f/d)

The Central Microscopy (CeMic) is the microscope core facility of the Max Planck Institute for Plant Breeding Research (MPIPZ) in Cologne. 

CeMic manages the microscope equipment of the MPIPZ, trains and supervises researchers in the operation of the instruments and consults and advises researchers on imaging techniques as well as image processing and analysis. The imaging requirements range from the whole plant level (with objects as large as several centimetres) to molecular details (like protein complexes at the nanoscale level). To cover this size range, the entire spectrum of imaging technologies – from a simple stereomicroscope to a sophisticated super-resolution light microscope and electron microscope (both transmission and scanning) – is available. CeMic also implements new sample preparation and imaging protocols to exploit the full potential that the technologies of the various microscopes provide.

Bioimage analysis workflows have become increasingly complex and the correct setup and practise requires knowledge of advanced bioimage analysis tools. We are seeking a dedicated and skilled Bioimage Analyst (m/f/d) to implement bioimage analysis workflows tailored for examining image data of research projects within the MPIPZ. The ideal candidate has a strong background in image analysis, computational biology, and a passion for advancing scientific research based on innovative imaging techniques.

Your tasks

• Assist with setting up workflows for image processing and analysis for both light and electron microscopy data.
• Advice and guidance in using image processing and archiving software.
• Explore bioimage analysis tools and advertise them to researchers at the MPIPZ.
• Organize trainings for tools available to researchers at the MPIPZ.
• 5Advice and guidance on image acquisition.

Your profile

We are seeking for a Bioimage Analyst with a background in (Plant) Biology and a profound knowledge of available image processing software and tools, with an emphasis on applications developed for analysis of plant specific processes. The candidate should also have a profound knowledge and experience with acquisition of fluorescent images using fluorescence microscope systems. A plus would be experience with the image archiving system OMERO and basic programming skills.

Qualifications

• PhD or equivalent in Bioinformatics, Computational Biology, Biology, or a related field.
• Proficiency in image analysis software (e.g. ImageJ, Imaris, Huygens, Arivis, and others).
• Experience with statistical analysis and data visualization tools.
• Extended experience in microscopy
• Background in plant cell biology (desirable but not essential)
• Strong problem-solving skills and ability to work independently and collaboratively.
• Excellent communication skills, both written and verbal.

Our offer

• A collaborative and innovative research environment.
• Access to state-of-the art imaging technologies and resources.
• The salary will be based on your qualifications and follow the recommendations of TVöD Bund. Social benefits correspond with those of the public service.
• Initially for 2 years with the possibility of extension.

Your application

Applications should be made through the online system by latest 31st December 2024.

Please include:

• A cover letter outlining your qualifications and interest in the position.
• A current CV or resume.
• Contact information for at least two references.

For further information please contact: Dr Ton Timmers, +49 221 5062-870.