Scientific Publications

Satanowski, A.; Marchal, D.G.; Perret, A.; Petit, J.-L.; Bouzon, M.; Döring, V.; Dubois, I.; He, H.; Smith, E.N.; Pellouin, V. et al.; Petri, H.M.; Rainaldi, V.; Nattermann, M.; Burgener, S.; Paczia, N.; Zarzycki, J.; Heinemann, M.; Bar-Even, A.; Erb, T.J.: Design and implementation of aerobic and ambient CO2-reduction as an entry-point for enhanced carbon fixation. Nature Communications 16 (1), 3134 (2025)

Ranner, J. L.; Stabl, G.; Piller, A.; Paries, M.; Sharma, S.; Zeng, T.; Spaccasassi, A.; Stark, T. D.; Gutjahr, C.; Dawid, C.: Untargeted metabolomics reveals novel metabolites in Lotus japonicus roots during arbuscular mycorrhiza symbiosis. New Phytologist 246 (3), pp. 1256 - 1275 (2025)

Fernie, A. R.; Martinez-Rivas, F.: Br(e)aking the tomato fruit size-sweetness trade-off. Trends in Plant Science 30 (4), pp. 350 - 351 (2025)

Fernie, A. R.; Zhu, F.: Chemical disarmament in plant defense: Erucamide blocks bacterial type III injectisome assembly. Developmental Cell 60 (8), pp. 1140 - 1141 (2025)

Hobby, D.; Tong, H.; Heuermann, M.; Mbebi, A. J.; Laitinen, R. A. E.; Dell’Acqua, M.; Altmann, T.; Nikoloski, Z.: Predicting plant trait dynamics from genetic markers. Nature Plants (2025)

Karakas, E.; Bulut, M.; Fernie, A. R.: Metabolome guided treasure hunt - lerning from metabolic diversity. Journal of Plant Physiology, 154494 (2025)

Kragler, F.; Bock, R.: The biology of grafting and its applications in studying information exchange between plants. Nature Plants (2025)

Li, Y.; Yang, Z.; Li, K.; Yang, C.; Lei, L.; Li, J.; Zhou, J.; Hou, H.; Liu, H.; Xiong, X. et al.; Zhan, C.; Shen, S.; Liu, X.; Maher, M.; Ahmad, H.; Fernie, A. R.; Luo, J.: Two major rice loci determine rice-staple food populations differences in vitamin B1 deficiency levels. Science Bulletin 70 (7), pp. 1046 - 1050 (2025)

Martins, A. O.; Silva, W. A.; Vallarino, J. G.; Omena-Garcia, R. P.; Osorio, S.; Fernie, A. R.; Nunes-Nesi, A.; Ribeiro, D. M.; Araújo, W. L.: Reductions of endogenous gibberellin content impact fruit development and modify tomato fruit metabolism during ripening. Plant Growth Regulation 105, pp. 497 - 514 (2025)

Müller, C.; dos Anjos, L.; Freire, F.B.S.; Fernie, A. R.; Daloso, D.M.; Eller, C.B.; Merchant, A.: Metabolic network plasticity underpins Eucalyptus water use efficiency under drought. Environmental and Experimental Botany 232, 106127 (2025)

Paajanen, P.; Tomkins, M.; Hoerbst, F.; Veevers, R.; Heeney, M.; Thomas, H. R.; Apelt, F.; Saplaoura, E.; Gupta, S.; Frank, M. et al.; Walther, D.; Faulkner, C.; Kehr, J.; Kragler, F.; Morris, R. J.: Re-analysis of mobile mRNA datasets raises questions about the extent of long-distance mRNA communication. Nature Plants (2025)

Raza, A.; Anas, M.; Bhardwaj, S.; Mir, R.A.; Charagh, S.; Elahi, M.; Zhang, X.; Mir, R.R.; Weckwerth, W.; Fernie, A. R. et al.; Siddique, K.H.M.; Hu, Z.; Varshney, R.K.: Harnessing metabolomics for enhanced crop drought tolerance. The Crop Journal 13 (2), pp. 311 - 327 (2025)

Seyis, M.; Razaghi-Moghadam, Z.; Nikoloski, Z.: Flux-sum coupling analysis of metabolic network models. PLOS Computational Biology 21 (4), e1012972 (2025)

Sun, Y.; Bock, R.; Li, Z.: A hidden intrinsic ability of bicistronic expression based on a novel translation reinitiation mechanism in yeast. Nucleic Acids Research 53 (6), gkaf220 (2025)

Sweetlove, L.; Ratcliffe, R.; Fernie, A. R.: Non-canonical plant metabolism. Nature Plants (2025)

Tong, Q.; Wang, Y.; Feil, R.; Lunn, J. E.; Xu, X.; Wang, Y.; Hilbert-Masson, G.; Kong, J.; Chen, J.; Delrot, S. et al.; Beauvoit, B.; Liang, Z.; Gomès, E.; Gibon, Y.; Dai, Z.: Integrated analysis of metabolites and enzyme activities reveals the plasticity of central carbon metabolism in grape (Vitis vinifera cv. Cabernet Sauvignon) berries under carbon limitation. Horticulture Research 12 (4), uhae363 (2025)

Wu, S.; Zhang, Y.; Luzarowska, U.; Yang, L.; Salem, M.A.; Thirumalaikumar , V. P.; Sade, N.; Galperin, V. E.; Fernie, A. R.; Sampathkumar, A. et al.; Bershtein, S.; Fusari, C. M.; Brotman, Y.: The homeostasis of β-alanine is key for Arabidopsis reproductive growth and development. The Plant Journal 122 (1), e70134 (2025)

Zhong, Y.; Chi, H.; Wu, T.; Fan, W.; Su, H.; Li, R.; Jiang, W.; Du, X.; Ma, Z.: Diversity of rhizosphere microbial communities in different rice varieties and their diverse adaptive responses to saline and alkaline stress. Frontiers in Microbiology Volume 16, 1537846. (2025)

de Moura Ferreira, M. A.; Menezes de Almeida, E. L.; Batista da Silveira, W.; Nikoloski, Z.: Protein-constrained models pinpoints the role of underground metabolism in robustness of metabolic phenotypes. iScience 28 (3), 112126 (2025)

Decros, G.; Fernie, A. R.: Spotlight on “Inhibition of mitochondrial energy production leads to reorganisation of the plant endomembrane system” by Wang et al. 2025. Journal of Mitochondria, Plastids and Endosymbiosis 3 (1), 2483404 (2025)