Scientific Publications

Diaz, C.; Kusano, M.; Sulpice, R.; Araki, M.; Redestig, H.; Saito, K.; Stitt, M.; Shin, R.: Determining novel functions of Arabidopsis 14-3-3 proteins in central metabolic processes. BMC Systems Biology 5, p. 192 - 192 (2011)

Dortay, H.; Akula, U. M.; Westphal, C.; Sittig, M.; Mueller-Roeber, B.: High-Throughput Protein Expression Using a Combination of Ligation-Independent Cloning (LIC) and Infrared Fluorescent Protein (IFP) Detection. PLoS One 6 (4), p. e18900 (2011)

Allen, A. E.; Dupont, C. L.; Obornik, M.; Horak, A.; Nunes-Nesi, A.; McCrow, J. P.; Zheng, H.; Johnson, D. A.; Hu, H. H.; Fernie, A. R. et al.; Bowler, C.: Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature 473 (7346), pp. 203 - 209 (2011)

Almeida, J.; Quadrana, L.; Asis, R.; Setta, N.; de Godoy, F.; Bermudez, L.; Otaiza, S. N.; da Silva, J. V. C.; Fernie, A. R.; Carrari, F. et al.; Rossi, M.: Genetic dissection of vitamin E biosynthesis in tomato. Journal of Experimental Botany 62 (11), pp. 3781 - 3798 (2011)

Angelovici, R.; Fait, A.; Fernie, A. R.; Galili, G.: A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. New Phytologist 189 (1), pp. 148 - 159 (2011)

Araujo, W. L.; Ishizaki, K.; Nunes-Nesi, A.; Tohge, T.; Larson, T. R.; Krahnert, I.; Balbo, I.; Witt, S.; Doermann, P.; Graham, I. A. et al.; Leaver, C. J.; Fernie, A. R.: Analysis of a Range of Catabolic Mutants Provides Evidence That Phytanoyl-Coenzyme A Does Not Act as a Substrate of the Electron-Transfer Flavoprotein/Electron-Transfer Flavoprotein:Ubiquinone Oxidoreductase Complex in Arabidopsis during Dark-Induced Senescence. Plant Physiology 157 (1), pp. 55 - 69 (2011)

Araujo, W. L.; Nunes-Nesi, A.; Fernie, A. R.: Fumarate: Multiple functions of a simple metabolite. Phytochemistry 72 (9), pp. 838 - 843 (2011)

Araujo, W. L.; Nunes-Nesi, A.; Osorio, S.; Usadel, B.; Fuentes, D.; Nagy, R.; Balbo, I.; Lehmann, M.; Studart-Witkowski, C.; Tohge, T. et al.; Martinoia, E.; Jordana, X.; DaMatta, F. M.; Fernie, A. R.: Antisense Inhibition of the Iron-Sulphur Subunit of Succinate Dehydrogenase Enhances Photosynthesis and Growth in Tomato via an Organic Acid-Mediated Effect on Stomatal Aperture. The Plant Cell 23 (2), pp. 600 - 627 (2011)

Arvidsson, S.; Perez-Rodriguez, P.; Mueller-Roeber, B.: A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytologist 191 (3), pp. 895 - 907 (2011)

Balazadeh, S.; Kwasniewski, M.; Caldana, C.; Mehrnia, M.; Zanor, M. I.; Xue, G. P.; Mueller-Roeber, B.: ORS1, an H(2)O(2)-Responsive NAC Transcription Factor, Controls Senescence in Arabidopsis thaliana. Molecular Plant 4 (2), pp. 346 - 360 (2011)

Banks, J. A.; Nishiyama, T.; Hasebe, M.; Bowman, J. L.; Gribskov, M.; dePamphilis, C.; Albert, V. A.; Aono, N.; Aoyama, T.; Ambrose, B. A. et al.; Ashton, N. W.; Axtell, M. J.; Barker, E.; Barker, M. S.; Bennetzen, J. L.; Bonawitz, N. D.; Chapple, C.; Cheng, C. Y.; Correa, L. G. G.; Dacre, M.; DeBarry, J.; Dreyer, I.; Elias, M.; Engstrom, E. M.; Estelle, M.; Feng, L.; Finet, C.; Floyd, S. K.; Frommer, W. B.; Fujita, T.; Gramzow, L.; Gutensohn, M.; Harholt, J.; Hattori, M.; Heyl, A.; Hirai, T.; Hiwatashi, Y.; Ishikawa, M.; Iwata, M.; Karol, K. G.; Koehler, B.; Kolukisaoglu, U.; Kubo, M.; Kurata, T.; Lalonde, S.; Li, K. J.; Li, Y.; Litt, A.; Lyons, E.; Manning, G.; Maruyama, T.; Michael, T. P.; Mikami, K.; Miyazaki, S.; Morinaga, S.; Murata, T.; Mueller-Roeber, B.; Nelson, D. R.; Obara, M.; Oguri, Y.; Olmstead, R. G.; Onodera, N.; Petersen, B. L.; Pils, B.; Prigge, M.; Rensing, S. A.; Riano-Pachon, D. M.; Roberts, A. W.; Sato, Y.; Scheller, H. V.; Schulz, B.; Schulz, C.; Shakirov, E. V.; Shibagaki, N.; Shinohara, N.; Shippen, D. E.; Sorensen, I.; Sotooka, R.; Sugimoto, N.; Sugita, M.; Sumikawa, N.; Tanurdzic, M.; Theissen, G.; Ulvskov, P.; Wakazuki, S.; Weng, J. K.; Willats, W. W. G. T.; Wipf, D.; Wolf, P. G.; Yang, L. X.; Zimmer, A. D.; Zhu, Q. H.; Mitros, T.; Hellsten, U.; Loque, D.; Otillar, R.; Salamov, A.; Schmutz, J.; Shapiro, H.; Lindquist, E.,. e. a.: The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants. Science 332 (6032), pp. 960 - 963 (2011)

Basler, G.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Mass-balanced randomization of metabolic networks. Bioinformatics 27 (10), pp. 1397 - 1403 (2011)

Basler, G.; Grimbs, S.; Ebenhoeh, O.; Selbig, J.; Nikoloski, Z.: Evolutionary significance of metabolic network properties. Journal of the Royal Society Interface 9 (71), pp. 1168 - 1176 (2011)

Basler, G.; Nikoloski, Z.: JMassBalance: mass-balanced randomization and analysis of metabolic networks. Bioinformatics 27 (19), pp. 2761 - 2762 (2011)

Bazzini, A. A.; Manacorda, C. A.; Tohge, T.; Conti, G.; Rodriguez, M. C.; Nunes-Nesi, A.; Villanueva, S.; Fernie, A. R.; Carrari, F.; Asurmendi, S.: Metabolic and miRNA Profiling of TMV Infected Plants Reveals Biphasic Temporal Changes. PLoS One 6 (12), p. e28466 (2011)

Bloem, E.; Rubekin, K.; Haneklaus, S.; Banfalvi, Z.; Hesse, H.; Schnug, E.: H(2)S and COS Gas Exchange of Transgenic Potato Lines with Modified Expression Levels of Enzymes Involved in Sulphur Metabolism. Journal of Agronomy and Crop Science 197 (4), pp. 311 - 321 (2011)

Branscheid, A.; Devers, E. A.; May, P.; Krajinski, F.: Distribution pattern of small RNA and degradome reads provides information on miRNA gene structure and regulation. Plant Signaling & Behavior 6 (10), pp. 1609 - 1611 (2011)

Brotman, Y.; Riewe, D.; Lisec, J.; Meyer, R. C.; Willmitzer, L.; Altmann, T.: Identification of enzymatic and regulatory genes of plant metabolism through QTL analysis in Arabidopsis. SI 168 (12), pp. 1387 - 1394 (2011)

Burgos, A.; Szymanski, J.; Seiwert, B.; Degenkolbe, T.; Hannah, M. A.; Giavalisco, P.; Willmitzer, L.: Analysis of short-term changes in the Arabidopsis thaliana glycerolipidome in response to temperature and light. The Plant Journal 66 (4), pp. 656 - 668 (2011)

Caldana, C.; Degenkolbe, T.; Cuadros-Inostroza, A.; Klie, S.; Sulpice, R.; Leisse, A.; Steinhauser, D.; Fernie, A. R.; Willmitzer, L.; Hannah, M. A.: High-density kinetic analysis of the metabolomic and transcriptomic response of Arabidopsis to eight environmental conditions. The Plant Journal 67 (5), pp. 869 - 884 (2011)