Zeitschriftenartikel (681)

181.
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Koch, A.; Krug, K.; Pengelley, S.; Macek, B.; Hauf, S.: Mitotic substrates of the kinase aurora with roles in chromatin regulation identified through quantitative phosphoproteomics of fission yeast. Science Signaling 4 (179), rs6 (2011)
182.
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Rösel, T.; Hung, L.-H.; Medenbach, J.; Donde, K.; Starke, S.; Benes, V.; Rätsch, G.; Bindereif, A.: RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. EMBO Journal 30 (10), S. 1965 - 1976 (2011)
183.
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Antonin, W.; Ungricht, R.; Kutay, U.: Traversing the NPC along the pore membrane: targeting of membrane proteins to the INM. The Nucleus 2 (2), S. 87 - 91 (2011)
184.
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Jean, G.; Nikolski, M.: SyDiG: uncovering Synteny in Distant Genomes. International Journal of Bioinformatics Research and Applications 7 (1), S. 43 - 62 (2011)
185.
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Eichner, J.; Zeller, G.; Laubinger, S.; Rätsch, G.: Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. BMC Bioinformatics 12, 55 (2011)
186.
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Laurell, E.; Beck, K.; Krupina, K.; Theerthagiri, G.; Bodenmiller, B.; Horvath, P.; Aebersold, R.; Antonin, W.; Kutay, U.: Phosphorylation of Nup98 by multiple kinases is crucial for NPC disassembly during mitotic entry. Cell 144 (4), S. 539 - 550 (2011)
187.
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Spencer, W.; Zeller, G.; Watson, J.; Henz, S.; Watkins, K.; McWhirter, R.; Petersen, S.; Sreedharan, V.; Widmer, C.; Jo, J. et al.; Reinke, V.; Petrella, L.; Strohme, S.; Von Stetina, S.; Katz, M.; Shaham, S.; Rätsch, G.; Miller, D.: A spatial and temporal map of C. elegans gene expression. Genome Research 21 (2), S. 325 - 341 (2011)
188.
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Hallem, E.; Spencer, W.; McWhirter, R.; Zeller, G.; Henz, S.; Rätsch, G.; Miller, D.; Horvitz, H.; Sternberg, P.; Ringstad, N.: Receptor-type guanylate cyclase is required for carbon dioxide sensation by Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America 108 (1), S. 254 - 259 (2011)
189.
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Gerstein, M.; Lu, Z.; Van Nostrand, E.; Cheng, C.; Arshinoff, B.; Liu, T.; Yip, K.; Robilotto, R.; Rechtsteiner, A.; Ikegami, K. et al.; Alves, P.; Chateigner, A.; Perry, M.; Morris, M.; Auerbach, R.; Feng, X.; Leng, J.; Vielle, A.; Niu, W.; Rhrissorrakrai, K.; Agarwal, A.; Alexander, R.; Barber, G.; Brdlik, C.; Brennan, J.; Brouillet, J.; Carr, A.; Cheung, M.-S.; Clawson, H.; Contrino, S.; Dannenberg, L.; Dernburg, A.; Desai, A.; Dick, L.; Dosé, A.; Du, J.; Egelhofer, T.; Ercan, S.; Euskirchen, G.; Ewing, B.; Feingold, E.; Gassmann, R.; Good, P.; Green, P.; Gullier, F.; Gutwein, M.; Guyer, M.; Habegger, L.; Han, T.; Henikoff, J.; Henz, S.; Hinrichs, A.; Holster, H.; Hyman, A.; Iniguez, A. L.; Janette, J.; Jensen, M.; Kato, M.; Kent, W. J.; Kephart, E.; Khivansara, V.; Khurana, E.; Kim, J. K.; Kolasinska-Zwierz, P.; Lai, E. C.; Latorre, I.; Leahey, A.; Lewis, S. E.; Lloyd, P.; Lochovsky, L.; Lowdon, R. F.; Lubling, Y.; Lyne, R.; MacCoss, M.; Mackowiak, S. D.; Mangone, M.; McKay, S.; Mecenas, D.; Merrihew, G.; Miller, D. M.; Muroyama, A.; Murray, J. I.; Ooi, S.-L.; Pham, H.; Phippen, T.; Preston, E. A.; Rajewski, N.; Rätsch, G.; Rosenbaum, H.; Rozowksy, J.; Rutherford, K.; Ruzanov, P.; Sarov, M.; Sasidharan, R.; Sboner, A.; Scheid, P.; Segal, E.; Shin, H.; Shou, C.; Slack, F. J.; Slightham, C.; Smith, R.; Spencer, W. C.; Stinson, E. O.; Taing, S.; Takasaki, T.; Vafeados, D.; Voronina, K.; Wang, G.; Washington, N. L.; Whittle, C. M.; Wu, B.; Yang, K.-K.; Zeller, G.; Zha, Z.; Zhong, M.; Zhou, X.; Ahringer, J.; Strome, S.; Gunsalus, K. C.; Micklem, G.; Liu, X. S.; Reinke, V.; Kim, S. K.; Hillier, L. W.; Henikoff, S.; Piano, F.; Snyder, M.; Stein, L.; Lieb, J. D.; Waterston, R. H.: Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 330 (6012), S. 1775 - 1787 (2010)
190.
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Jean, G.; Kahles, A.; Sreedharan, V.; De Bona, F.; Rätsch, G.: RNA-Seq read alignments with PALMapper. Current Protocols in Bioinformatics Chapter 11 (Supplement 32), Unit 11.6 (2010)
191.
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Laubinger, S.; Zeller, G.; Henz, S.; Buechel, S.; Sachsenberg, T.; Wang, J.-W.; Rätsch, G.; Weigel, D.: Global effects of the small RNA biogenesis machinery on the Arabidopsis thaliana transcriptome. Proceedings of the National Academy of Sciences of the United States of America 107 (41), S. 17466 - 17573 (2010)
192.
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Bohnert, R.; Rätsch, G.: rQuant.web: a tool for RNA-Seq-based transcript quantitation. Nucleic Acids Research (London) 38, S. W348 - W351 (2010)
193.
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Weir, J.; Bonneau, F.; Hentschel, J.; Conti, E.: Structural analysis reveals the characteristic features of Mtr4, a DExH helicase involved in nuclear RNA processing and surveillance. Proceedings of the National Academy of Sciences of the United States of America 107 (27), S. 12139 - 12144 (2010)
194.
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Sonnenburg, S.; Rätsch, G.; Henschel, S.; Widmer, C.; Behr, J.; Zien, A.; De Bona, F.; Binder, A.; Gehl, C.; Franc, V.: The SHOGUN Machine Learning Toolbox. Journal of Machine Learning Research 11, S. 1799 - 1802 (2010)
195.
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Theerthagiri, G.; Eisenhardt, N.; Schwarz, H.; Antonin, W.: The nucleoporin Nup188 controls passage of membrane proteins across the nuclear pore complex. The Journal of Cell Biology: JCB 189 (7), S. 1129 - 1142 (2010)
196.
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Stegle, O.; Drewe, P.; Bohnert, R.; Borgwardt, K.; Rätsch, G.: Statistical Tests for Detecting Differential RNA-Transcript Expression from Read Counts. Nature Precedings 2010 (2010)
197.
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Koch, A.; Hauf, S.: Strategies for the identification of kinase substrates using analog-sensitive kinases. European Journal of Cell Biology: EJCB 89 (2-3), S. 184 - 193 (2010)
198.
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Chan, Y.; Marks, M.; Jones, F.; Villarreal Jr., G.; Shapiro, M.; Brady, S.; Southwick, A.; Absher, D.; Grimwood, J.; Schmutz, J. et al.; Myers, R.; Petrov, D.; Jónsson, B.; Schluter, D.; Bell, M.: Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer. Science 327 (5963), S. 302 - 305 (2010)
199.
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Schweikert, G.; Zien, A.; Zeller, G.; Behr, J.; Dieterich, C.; Ong, C.; Philips, P.; De Bona, F.; Hartmann, L.; Bohlen, A. et al.; Krüger, N.; Sonnenburg, S.; Rätsch, G.: mGene: Accurate SVM-based gene finding with an application to nematode genomes. Genome Research 19 (11), S. 2133 - 2143 (2009)
200.
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Kitano, J.; Ross, J.; Mori, S.; Kume, M.; Jones, F.; Chan, Y.; Absher, D.; Grimwood, J.; Schmutz, J.; Myers, R. et al.; Kingsley, D.; Peichel, C.: A role for a neo-sex chromosome in stickleback speciation. Nature 461 (7267), S. 1079 - 1083 (2009)
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