Wissenschaftliche Publikationen

Batki, J.; Hetzel, S.; Schifferl, D.; Bolondi, A.; Walther, M.; Wittler, L.; Grosswendt, S.; Herrmann, B. G.; Meissner, A.: Extraembryonic gut endoderm cells undergo programmed cell death during development. Nature Cell Biology 26 (6), S. 868 - 877 (2024)

van der Weijden, V. A.; Bulut-Karslioglu, A.: Embryos burn fat in standby. Trends in Cell Biology (2024)

Bolondi, A.; Law, B. K.; Kretzmer, H.; Gassaloglu, S. I.; Buschow, R.; Riemenschneider, C.; Yang, D.; Walther, M.; Veenvliet, Jesse V.; Meissner, A. et al.; Smith, Z. D.; Chan, M. M.: Reconstructing axial progenitor field dynamics in mouse stem cell-derived embryoids. Developmental Cell 59 (12), S. 1489 - 1505 (2024)

Zhao, Y.; Kohl, C.; Rosebrock, D.; Hu, Q.; Hu, Y.; Vingron, M.: CAbiNet: joint clustering and visualization of cells and genes for single-cell transcriptomics. Nucleic Acids Research, gkae480 (2024)

Borisova, E.; Newman, A. G.; Couce Iglesias, M.; Dannenberg, R.; Schaub, T.; Qin, B.; Rusanova, A.; Brockmann, M.; Koch, J.; Daniels, M. et al.; Turko, P.; Jahn, O.; Kaplan, D. R.; Rosário, M.; Iwawaki, T.; Spahn, C. M. T.; Rosenmund, C.; Meierhofer, D.; Kraushar, M. L.; Tarabykin, V.; Ambrozkiewicz, M. C.: Protein translation rate determines neocortical neuron fate. Nature Communications 15 (1), 4879 (2024)

Campana , P. A.; Prasse , P.; Lienhard, M.; Thedinga, K.; Herwig, R.; Scheffer , T.: Cancer drug sensitivity estimation using modular deep Graph Neural Networks. NAR: genomics and bioinformatics 6 (2), lqae043 (2024)

Gribben, C.; Galanakis, V.; Calderwood, A.; Williams, E. C.; Chazarra-Gil , R.; Larraz, M.; Frau, C.; Puengel, T.; Guillot, A.; Rouhani, F. J. et al.; Mahbubani, K.; Godfrey, E.; Davies, S. E.; Athanasiadis, E.; Saeb-Parsy, K.; Tacke, F.; Allison, M.; Mohorianu, I.; Vallier, L.: Acquisition of epithelial plasticity in human chronic liver disease. Nature 630 (8015), S. 166 - 173 (2024)

Stötzel, M.; Cheng, C.-Y.; Ilik, I. A.; Sampath Kumar, A.; Akbari-Omgba, P.; van der Weijden, V. A.; Zhang, Y.; Vingron, M.; Meissner, A.; Aktas, T. et al.; Kretzmer, H.; Bulut-Karslioglu, A.: TET activity safeguards pluripotency throughout embryonic dormancy. Nature Structural & Molecular Biology (2024)

Sato, N. S.; Rosa , V. S.; Makhlouf, A.; Kretzmer, H.; Sampath Kumar, A.; Grosswendt, S.; Mattei, A. L.; Courbot, O.; Wolf, S.; Boulanger, J. et al.; Langevin, F.; Wiacek, M.; Karpinski, D.; Elosegui-Artola, A.; Meissner, A.; Zernicka-Goetz , M.; Shahbazi, M. N.: Basal delamination during mouse gastrulation primes pluripotent cells for differentiation. Developmental Cell 59 (10), S. 1252 - 1268 (2024)

Ulicevic, J.; Shao, Z.; Jasnovidova, O.; Bressin, A.; Gajos, M.; Ng, A. H.; Annaldasula, S.; Meierhofer, D.; Church, G. M.; Busskamp, V. et al.; Mayer, A.: Uncovering the dynamics and consequences of RNA isoform changes during neuronal differentiation. Molecular Systems Biology (2024)

Iyer, D. P.; Moyon, L.; Ringeling, F. R.; Cheng, C.-Y.; Wittler, L.; Canzar, S.; Marsico, A.; Bulut-Karslioglu, A.: Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy. Genome Research 34 (4), S. 589 - 589 (2024)

Tsaytler, P.; Blaess, G.; Scholze-Wittler, M.; Koch, F.; Herrmann, B. G.: Early neural specification of stem cells is mediated by a set of SOX2-dependent neural-associated enhancers. Stem Cell Reports 19 (5), S. 618 - 628 (2024)

Rosebrock, D.; Vingron, M.; Arndt, P. F.: Modeling gene expression cascades during cell state transitions. iScience 27 (4), 109386 (2024)

Springer, C.; Binsch, C.; Weide, D.; Toska, L.; Cremer, A. L.; Backes, H.; Scheel, A. K.; Espelage, L.; Kotzka, J.; Sill, S. et al.; Kurowski, A.; Daebin, K.; Karpinski, S.; Schnurr, T. M.; Hansen, T.; Hartwig, S.; Lehr, S.; Cames, S.; Brüning, J.; Lienhard, M.; Herwig, R.; Börno, S.; Timmermann, B.; Al-Hasani, H.; Chadt, A.: Depletion of TBC1D4 improves the metabolic exercise response by overcoming genetically induced peripheral insulin resistance. Diabetes, db230463 (2024)

Kudrin, P.; Singh, A.; Meierhofer, D.; Kuśnierczyk, A.; Ørom, U. A. V.: N4-acetylcytidine (ac4C) promotes mRNA localization to stress granules. EMBO Reports 25 (4), S. 1814 - 1834 (2024)

Ibrahim, D. M.: Enhancer contacts during embryonic development show diverse interaction modes and modest yet significant increases upon gene activation. Nature Genetics (2024)

Sheinman, M.; Arndt, P. F.; Massip, F.: Modeling the mosaic structure of bacterial genomes to infer their evolutionary history. PNAS 121 (13), e2313367121 (2024)

Andrique, C.; Bonnet, A. L.; Dang, J.; Lesieur, J.; Krautzberger, A. M.; Baroukh, B.; Torrens, C.; Sadoine, J.; Schmitt, A.; Rochefort, G. Y. et al.; Bardet, C.; Six, I.; Houillier, P.; Tharaux, P. L.; Schrewe, H.; Gaucher, C.; Chaussain, C.: Vasorin as an actor of bone turnover? Journal of Cellular Physiology (2024)

Raaz, L.; Mendez, P.-L.; Mundlos, S.; Knaus, P.; Jatzlau, J.: Protocol for chromatin accessibility profiling of human endothelial cells cultured under fluid shear stress using ATAC-seq. STAR Protocols 5 (1), 102859 (2024)

Hauswedell , H.; Hetzel, S.; Gottlieb , S. G.; Kretzmer, H.; Meissner, A.; Reinert, K.: Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. Bioinformatics 40 (3), btae097 (2024)